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NARall: a novel tool for reconstruction of the all-atom structure of nucleic acids from heavily coarse-grained model

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Bibliographic Details
Main Authors: Łukasz, Golon, Adam K., Sieradzan
Format: Book
Language:English
Published: Springer 2023
Subjects:
DNA self-assembly
NARES-2P
Online Access:https://link.springer.com/article/10.1007/s11696-022-02634-x
https://dlib.phenikaa-uni.edu.vn/handle/PNK/8157
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spelling oai:localhost:PNK-81572023-04-20T07:50:47Z NARall: a novel tool for reconstruction of the all-atom structure of nucleic acids from heavily coarse-grained model Łukasz, Golon Adam K., Sieradzan DNA self-assembly NARES-2P CC BY Nucleic acids are one of the most important cellular components. These molecules have been studied both experimentally and theoretically. As all-atom simulations are still limited to short time scales, coarse-grain modeling allows to study of those molecules on a longer time scale. Nucleic-Acid united RESidue (NARES-2P) is a low-resolution coarse-grained model with two centers of interaction per repeating unit. It has been successfully applied to study DNA self-assembly and telomeric properties. This force field enables the study of nucleic acids Behavior on a long time scale but lacks atomistic details. In this article, we present new software to reconstruct atomistic details from the NARES-2P model. It has been applied to RNA pseudoknot, nucleic acid four-way junction, G-quadruplex and DNA duplex converted to NARES-2P model and back. Moreover, it was applied to DNA structure folded and self-assembled with NARES-2P. 2023-04-20T07:50:47Z 2023-04-20T07:50:47Z 2022 Book https://link.springer.com/article/10.1007/s11696-022-02634-x https://dlib.phenikaa-uni.edu.vn/handle/PNK/8157 en application/pdf Springer
institution Digital Phenikaa
collection Digital Phenikaa
language English
topic DNA self-assembly
NARES-2P
spellingShingle DNA self-assembly
NARES-2P
Łukasz, Golon
Adam K., Sieradzan
NARall: a novel tool for reconstruction of the all-atom structure of nucleic acids from heavily coarse-grained model
description CC BY
format Book
author Łukasz, Golon
Adam K., Sieradzan
author_facet Łukasz, Golon
Adam K., Sieradzan
author_sort Łukasz, Golon
title NARall: a novel tool for reconstruction of the all-atom structure of nucleic acids from heavily coarse-grained model
title_short NARall: a novel tool for reconstruction of the all-atom structure of nucleic acids from heavily coarse-grained model
title_full NARall: a novel tool for reconstruction of the all-atom structure of nucleic acids from heavily coarse-grained model
title_fullStr NARall: a novel tool for reconstruction of the all-atom structure of nucleic acids from heavily coarse-grained model
title_full_unstemmed NARall: a novel tool for reconstruction of the all-atom structure of nucleic acids from heavily coarse-grained model
title_sort narall: a novel tool for reconstruction of the all-atom structure of nucleic acids from heavily coarse-grained model
publisher Springer
publishDate 2023
url https://link.springer.com/article/10.1007/s11696-022-02634-x
https://dlib.phenikaa-uni.edu.vn/handle/PNK/8157
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score 8.891053

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