NARall: a novel tool for reconstruction of the all-atom structure of nucleic acids from heavily coarse-grained model
CC BY
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| Định dạng: | Sách |
| Ngôn ngữ: | English |
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Springer
2023
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| Truy cập trực tuyến: | https://link.springer.com/article/10.1007/s11696-022-02634-x https://dlib.phenikaa-uni.edu.vn/handle/PNK/8157 |
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oai:localhost:PNK-81572023-04-20T07:50:47Z NARall: a novel tool for reconstruction of the all-atom structure of nucleic acids from heavily coarse-grained model Łukasz, Golon Adam K., Sieradzan DNA self-assembly NARES-2P CC BY Nucleic acids are one of the most important cellular components. These molecules have been studied both experimentally and theoretically. As all-atom simulations are still limited to short time scales, coarse-grain modeling allows to study of those molecules on a longer time scale. Nucleic-Acid united RESidue (NARES-2P) is a low-resolution coarse-grained model with two centers of interaction per repeating unit. It has been successfully applied to study DNA self-assembly and telomeric properties. This force field enables the study of nucleic acids Behavior on a long time scale but lacks atomistic details. In this article, we present new software to reconstruct atomistic details from the NARES-2P model. It has been applied to RNA pseudoknot, nucleic acid four-way junction, G-quadruplex and DNA duplex converted to NARES-2P model and back. Moreover, it was applied to DNA structure folded and self-assembled with NARES-2P. 2023-04-20T07:50:47Z 2023-04-20T07:50:47Z 2022 Book https://link.springer.com/article/10.1007/s11696-022-02634-x https://dlib.phenikaa-uni.edu.vn/handle/PNK/8157 en application/pdf Springer |
| institution |
Digital Phenikaa |
| collection |
Digital Phenikaa |
| language |
English |
| topic |
DNA self-assembly NARES-2P |
| spellingShingle |
DNA self-assembly NARES-2P Łukasz, Golon Adam K., Sieradzan NARall: a novel tool for reconstruction of the all-atom structure of nucleic acids from heavily coarse-grained model |
| description |
CC BY |
| format |
Book |
| author |
Łukasz, Golon Adam K., Sieradzan |
| author_facet |
Łukasz, Golon Adam K., Sieradzan |
| author_sort |
Łukasz, Golon |
| title |
NARall: a novel tool for reconstruction of the all-atom structure of nucleic acids from heavily coarse-grained model |
| title_short |
NARall: a novel tool for reconstruction of the all-atom structure of nucleic acids from heavily coarse-grained model |
| title_full |
NARall: a novel tool for reconstruction of the all-atom structure of nucleic acids from heavily coarse-grained model |
| title_fullStr |
NARall: a novel tool for reconstruction of the all-atom structure of nucleic acids from heavily coarse-grained model |
| title_full_unstemmed |
NARall: a novel tool for reconstruction of the all-atom structure of nucleic acids from heavily coarse-grained model |
| title_sort |
narall: a novel tool for reconstruction of the all-atom structure of nucleic acids from heavily coarse-grained model |
| publisher |
Springer |
| publishDate |
2023 |
| url |
https://link.springer.com/article/10.1007/s11696-022-02634-x https://dlib.phenikaa-uni.edu.vn/handle/PNK/8157 |
| _version_ |
1763724455282999296 |
| score |
8.893527 |